Tasty with cool decor.  Not sure I can get over the cult non-paid employees.

Deli Rose
315 East Broadway Vista, California 92084
YellowDeli.com

In-house made bread this good, you should be able to marry it.

Turkey Cobb Sandwich on Rosemary with Olive Oil
2750 Dewey Road San Diego, CA 92106
Con Pane Rustic Breads & Cafe on Yelp

I grew up with this in SF.  The breakfast bowl sounds gimmicky, not so much.

Clam Chowder and a Bacon & Peppers Scamble
113 S. Las Posas, Suite 112 San Marcos, CA 92078
BoudinBakery.com